PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034252-PA
Common NameOsI_35609
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20904.2 Da    PI: 10.3739
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034252-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.3e-13842741
                      HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
            SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                        r vt+ +Rr+g++KK  ELS+LC ++++++++ 
  BGIOSGA034252-PA  8 AARRVTLRRRRAGLIKKVTELSILCSVQASIVVYN 42
                      4689****************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.001154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.386142IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-15389IPR002100Transcription factor, MADS-box
PfamPF003191.0E-12749IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MARHTKNAAR RVTLRRRRAG LIKKVTELSI LCSVQASIVV YNIDEAGDPV VWPSIEEAKN  60
MWSKLMDMSE ATQKKWMQDS KTLLQQQIMK LQKKLDNLKA ENYKREITNI ISEIGSGHRK  120
NLNDLSPEMV KNVKREAAKL WEAIRNRIIE LHAQGASSSV VVAPQVEIVA PHASQFDLNE  180
HALV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2ZCU41e-133A2ZCU4_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA034252-PA1e-133(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1651545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.16e-10AGAMOUS-like 48